One of the most inscrutable, pervasive and enduring secret societies on Earth, the Atlas Foundation traditionally pursued world domination but currently uses its covert power and influence for humanity's greater good.
Steeped in advanced science and ancient sorcery, the society regards itself as a perpetuation of the ancient Mongol Empire, with each leader a descendant of and rightful successor to Genghis Khan. As he grows old, each Khan seeks a successor. For most of the 19th Century, the Atlas Foundation society was led by Master Plan. Plan had long since selected his potential successor, Jimmy Woo, despite the attempts of Jimmy's parents to spare him this legacy and their flight to America. Jimmy Woo became one of the top West Coast FBI agents, but Plan Chu made himself into Woo's greatest enemy, the Yellow Claw, so as to help Jimmy advance his career and hone his skills. Indeed, nearly all of Jimmy's adventurers and allies were in some way all part of the Atlas Foundation's machinations.
One such adventure was prompted by the Yellow Claw's kidnapping of President Eisenhower in 1958. Authorized to assemble a special rescue team Department Zero, Woo reviewed his files on active super-beings and instinctively selected a roster that came to him in a dream: Gorilla Man, Venus, Marvel Boy and aquatic heroine Namora. Namora declined to join the mission but found a replacement by helping Woo salvage the lost Human Robot. Meshing smoothly as a team, Woo's "Department Zero" rescued Eisenhower and accomplished various other missions, repeatedly clashing with Atlas Foundation agents and pawns such as the mutated canine cosmonaut Laika; however, U.S. authorities ultimately decided the world was not ready for such bizarre heroes and disbanded the group, declaring their missions classified.
In recent years, now an agent of S.H.I.E.L.D., Jimmy longed for the action in his youth. He renewed his investigations of the Atlas Foundation alongside a team of rogue S.H.I.E.L.D. agents, but his team was killed and Woo himself nearly slain while invading the Temple of Atlas. Woo was eventually rescued and revived by his former allies of the G-Men, who agreed to help Woo uncover the truth of the Foundation. Joined by S.H.I.E.L.D.'s Derek Khanata, the heroes subsequently exposed and shut down many subversive Atlas operations operating under various legitimate business fronts, finally invading the Temple of Atlas itself. The heroes confronted Master Plan and his royal advisor, Mr. Lao, who revealed Woo's true heritage and the Atlas Foundation's plans for him. Seeing a chance to use the Atlas Foundation's immense resources for good, Woo accepted his new post as Khan of the Eternal Empire and CEO of the Atlas Foundation with the blessing of Plan, whom Lao promptly consumed. Allowing the world to believe them slain by the Claw, Jimmy Woo's heroic team has remained together as the core Agents of Atlas, the foundation's primary covert super-operatives. Derek Khanata has concealed their continued existence from his S.H.I.E.L.D. superiors. 
The transition away from being a criminal organization was not easy however as one of the the early missions after becoming the Atlas foundation involved a rogue faction of the organization who did not want to stop their criminal activities. Using a theatre production they would use the audiences life force, combined with totemic vessel to create an army of Monsters. The group teamed up with Spider-Man to stop them, after him and the group were attacked. Initially unsure which side the group was on Spider-Man fought with Gorilla Man until Siren used her song to calm him down. Teaming up, they stopped the rogue faction when M-11 destroyed their power source at the Rockefeller Center. In order to keep. their existence a secret, Martian Boy wiped everybody but his teams memory of the incident including Spider-Man's.
During the Secret Invasion, Namora killed a Super Skrull and was captured by other Skrulls. She was later rescued by Gorilla Man and M-11, and returned to the Martian Boy's Ship with a Skrull as a hostage. Dissecting the hostage, Martian Boy learns the secrets of the Skrull invasion just as their location is discovered, the team defends the ship and Jimmy asks Venus to us her powers the kill the attackers. Venus doesn't want to use her powers to kill and Martian Boy reveals that the Skrulls are not malevolent and just want to join the human and skrull race together. Jimmy however, is defending the human race and gets M-11 to wipe out all the attacking Skrulls.
The Atlas Foundation hindered the Skrulls' activities on the West Coast during their Invasion. Afterwards, however, the world had changed, and Woo and his team took a surprising step: to use Plan Chu's villainous reputation to present themselves as the Agents of the Atlas Empire. Their first act was to steal all the gold in Fort Knox, which Norman Osborn had earmarked for special weapons programs.
Then presenting themselves as valuable allies, offering to build Osborn weapons in a floating factory in the Hudson River. However, they are also letting the underworld know that Atlas is active, waiting for a hero or the authorities to come shut the factory down.
The Agents of Atlas successfully form an alliance between Namor McKenzie and the Atlanteans when Namora and the Sub-Mariner express their love and decided to marry. Despite Namor's pleadings, Namora decides to join the Agents of Atlas to further their goals. After Jimmy Woo learns of the location of his old love Suwan, now the Jade Claw, leader of the Great Wall. His visit ends up breaking an ancient treaty between the Atlas Foundation and the Great Wall that was unbeknown to Woo. Despite his love for Suwan, the Jade Claw's relentless assault on the Atlas Foundation's operations leaves him and the Agents no choice but to end her rule. After Suwan's defeat, Woo leaves Temujin in charge of the Great Wall as a new Asian branch of the Atlas Foundation.
Agents of Atlas
- Jimmy Woo
- Namora (Aquaria Neptunia)
- Gorilla-Man (Kenneth Hale)
- Human Robot (M-11)
- Uranian (Robert Grayson)
- Mr. Lao - Adviser to the Head of the Atlas Foundation
- Temugin - Second in Command of Atlas Foundation
- Derek Khanata - Overseer of Atlas
- Jade Claw
- In addition, the team has access to all the shipping and aircraft of the Atlas Foundation.
- Silver Bullet: During the 1950s, Department Zero used a rocket ship piloted by Marvel Boy.
Weapons: Various weapons
- This team is based on the Avengers from Earth-9904.
- During its first run, the "Agents of Atlas" were actually working AGAINST actual agents of the Atlas organization, until they joined it.
- 11 Agents of Atlas (Earth-616) Members
- 55 Appearances of Agents of Atlas (Earth-616)
- Minor Appearances of Agents of Atlas (Earth-616)
- 5 Media Agents of Atlas (Earth-616) was Mentioned in
- 35 Images that include Agents of Atlas (Earth-616)
- Team Gallery: Agents of Atlas (Earth-616)